Spatial FFPE ATAC-Seq

Bring Spatial Chromatin Profiling to Archival FFPE Tissues

Spatial FFPE ATAC-seq for accessible chromatin on archival tissue

Profile open chromatin directly on FFPE sections—keep morphology, preserve spatial context, and reveal regulatory programs in the samples you already have banked.

  • FFPE-first workflow

    Built for formalin-fixed, paraffin-embedded tissue so you can move from archives to spatial regulatory maps without switching your sample strategy.

  • Whole-tissue context (no dissociation)

    Maintain spatial organization while measuring chromatin accessibility—ideal for tumor microenvironment, heterogeneous lesions, and complex pathology.

  • From peaks to programs

    Peak calling, gene activity scoring, motif/TF enrichment, and spatial neighborhood analysis—packaged into clear, publication-ready outputs.

  • Designed for interpretation

    Align accessibility with H&E/IF and integrate with complementary readouts to connect epigenetic state to tissue architecture and phenotype.

Sample type FFPE tissue sections
What you get Peaks • gene activity • motifs
Context preserved Morphology-aligned outputs
Built for Oncology & clinical cohorts

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