Spatial Epigenomics with Cellular Resolution

Map gene regulation in tissue like never before

AtlasXomics offers the first and only platform for high-resolution spatial epigenome mapping—combining spatial barcoding with ATAC-seq and CUT&Tag. Study gene regulation in intact tissues while preserving spatial context across cell types and regulatory states.

Designed for discovery in cancer, development, and aging, our platform helps you uncover the epigenetic mechanisms that drive disease—directly in situ. With intuitive kits and expert support, spatial epigenomics is now accessible to every lab.

Visual representation of a brain with a color-coded map on the left, and a legend with colors labeled C1 to C8, and C9 to C16 on the right. The map includes various clusters of multicolored pixels, and there are three small graphs beside the legend showing frequency peaks corresponding to labels C1, C2, and C3.

Unique set of comprehensive spatial epigenomics solutions

Histology Image

Electron microscope image of a small, irregularly shaped particle with a rough surface, marked with a blue diamond overlay.

Analyze a 5.5mm x 5.5mm region on a standard 1 x 3 inch pathology slide

Spatial ATAC-Seq

A detailed diagram of a plant cell, showing the cell wall, chloroplasts, and other organelles.

Maps open chromatin across tissue sections (gene regulatory regions)

Spatial CUT&Tag

Diagram of a cell membrane showing transmembrane proteins, phospholipid bilayer, and carbohydrate chains.

Maps histone modifications or transcription factor binding in situ

AtlasXomics Public Data

Explore raw, downloadable datasets generated with AtlasXomics spatial epigenomics technologies. Browse a few highlights below or jump straight to the full Data Portal.

Open Data Portal ↗
Spatial ATAC-seqFree Download

Epigenomic landscape of human dorsal root ganglion: sex differences & nociceptive gene regulation

Accessibility programs in hDRG highlighting transcriptional regulation across nociceptor populations.

AtlasXomics • Human • DRG
View on Data Portal ↗
Spatial ATAC-seqFree Download

Spatially organized cellular communities form the developing mouse heart

Chromatin accessibility across intact embryonic heart sections from early chamber formation to neonatal adaptation.

AtlasXomics • Mouse • Heart
View on Data Portal ↗
Spatial ATAC-seqFree Download

Distinct chromatin accessibility changes during yolk sac tumor infiltration

High-resolution mapping of accessibility and TF motifs in a germinoma-derived xenograft model.

AtlasXomics • Human • Xenograft
View on Data Portal ↗
Spatial ATAC-seqFree Download

Spatial profiling of chromatin accessibility reveals alteration of glial cells in Alzheimer’s disease mouse brain

Microenvironment-dependent accessibility shifts across AD-associated glial populations.

AtlasXomics • Mouse • Brain
View on Data Portal ↗
Spatial ATAC-seqFree Download

Spatial ATAC-seq mapping of gastric adenocarcinoma at 10 µm resolution

Tumor architecture preserved while profiling accessibility to uncover epigenetic mechanisms of heterogeneity.

AtlasXomics • Human • Stomach
View on Data Portal ↗
Browse All Public Datasets ↗